Scaffold Ga0074071_1000360

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074071_1000360

Scaffold Ga0074071_1000360

Overview

Basic Information
Taxon OID	3300005258 Open in IMG/M
Scaffold ID	Ga0074071_1000360 Open in IMG/M
Source Dataset Name	Microbial communities on the surface of bentonite enhanced biochar
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16418
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Microbial Communities On The Surface Of Bentonite Enhanced Biochar

Source Dataset Sampling Location
Location Name	Sydney
Coordinates	Lat. (^o)	-33.917926	Long. (^o)	151.235347	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020435	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074071_100036010	F020435	AGGAGG	VIRLSDLVSALTPSEYAELALVLFLAVFTAVAIRHGGKRRAAEHAACAQLPLFDDAEVRR

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