Scaffold Ga0071344_1018791

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0071344_1018791

Scaffold Ga0071344_1018791

Overview

Basic Information
Taxon OID	3300005259 Open in IMG/M
Scaffold ID	Ga0071344_1018791 Open in IMG/M
Source Dataset Name	Freshwater pond sediment microbial communities from Middleton WI, enriched with Humic Acid and Glucose under anaerobic conditions - HA Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4044
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humic Acid And/Or Glucose Under Anaerobic Conditions

Source Dataset Sampling Location
Location Name	Middleton, WI
Coordinates	Lat. (^o)	43.0603	Long. (^o)	-89.5717	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002889	Metagenome / Metatranscriptome	523	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071344_10187911	F002889	GAGG	MNRNARSFCFLVLMFAALVGCSSQPPAKESKKAGAVLDKIQGKAQVLDESTPTDVALNAGGPTVYLWEGVRRYRLFFKTAAQVVHGKEYVAEGVYAQKAIDEIGDPDQGKNGYPLASSCERVVRMAWSGLPFDVLDGNASVLRTKVQRYPARPVFLVTRLEPVTAKENGADSAKPEKDIPEVSVAADKQRASLIEGPSVQTAPLWEPAGGTLRCKVVIDPEGKVSELLSGTQLCEAVPWSKYRYQPPVQGGHPVQVKTEVEVRFEPRK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.