NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074072_1000012

Scaffold Ga0074072_1000012


Overview

Basic Information
Taxon OID3300005260 Open in IMG/M
Scaffold IDGa0074072_1000012 Open in IMG/M
Source Dataset NameMicrobial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)131870
Total Scaffold Genes121 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (71.07%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Microbial Communities On The Surface Of Biochar

Source Dataset Sampling Location
Location NameSydney
CoordinatesLat. (o)-33.917926Long. (o)151.235347Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001820Metagenome / Metatranscriptome630Y
F020950Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0074072_1000012113F001820AGGAGGMSAVILAVFNDFETADRVRTSLVRDGFPTDRVDLTAARELGRAACQPASSIHDKCVQYFSTFLRNQGEEHYPEMLAQRIDNGSTAVTVQPRGAIETARATEILKDAEPADVVAHDLAKQGWEHAASRHGGKYWIKHVWIEDSPDTHCIYCRLFPGSSH*
Ga0074072_100001275F020950GGAGMSTYGSRLAWSLSLLVIFATGCATREYRMDAAADRDDNRRAQFEHCRDQGRSDCDAILNAPVSSNTRRSDSVREHERRLAYDHCVDRGGSDCDDLLHHD*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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