NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071346_1003531

Scaffold Ga0071346_1003531


Overview

Basic Information
Taxon OID3300005263 Open in IMG/M
Scaffold IDGa0071346_1003531 Open in IMG/M
Source Dataset NameFreshwater pond sediment microbial communities from Middleton WI, enriched with Humic Acid Only under anaerobic conditions - HA Sample 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9954
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humic Acid And/Or Glucose Under Anaerobic Conditions

Source Dataset Sampling Location
Location NameMiddleton, Wisconsin
CoordinatesLat. (o)43.0603Long. (o)-89.5717Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F106197Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0071346_100353111F106197GGTGGMKEVLVCILLLLLWMCVDCVSADTISAQIDSFDFPSGDWYRGXRGSDQGGANIWIKNTGDVGHLFWVSYEVMDRRGQWYSAPPEPVYADPGSSTYFVNPVWHIPDDAELGSYQADFYLYSYYDSRTGELSEELDQVDLAGAFSVVG*

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