NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071346_1084568

Scaffold Ga0071346_1084568


Overview

Basic Information
Taxon OID3300005263 Open in IMG/M
Scaffold IDGa0071346_1084568 Open in IMG/M
Source Dataset NameFreshwater pond sediment microbial communities from Middleton WI, enriched with Humic Acid Only under anaerobic conditions - HA Sample 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1669
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humic Acid And/Or Glucose Under Anaerobic Conditions

Source Dataset Sampling Location
Location NameMiddleton, Wisconsin
CoordinatesLat. (o)43.0603Long. (o)-89.5717Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002889Metagenome / Metatranscriptome523Y

Sequences

Protein IDFamilyRBSSequence
Ga0071346_10845682F002889N/ALVLMFAALVGCSSQPPAKESKKAGAVLDKIQGKAQVLDESTPTDVALNAGGPTVYLWEGVRRYRLFFKTAAQVVHGKEYVAEGVYAQKAIDEIGDPDQGKNGYPLASSCERVVRMAWSGLPFDVLDGNASVLRTKVQRYPARPVFLVTRLEPVTAKENGADSAKPEKDIPEVSVAADKQRASLIEGPSVQTAPLWEPAGGTLRCKVVIDPEGKVSELLSGTQLCEAVPWSKYRYQPPVQGGHPVQVKTEVEVRFEPRK*

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