Scaffold Ga0073581

Basic Information
Taxon OID	3300005264 Open in IMG/M
Scaffold ID	Ga0073581_101090 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Texas, Austin
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Texas, Austin

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18844
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (82.14%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

18844

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (82.14%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location
Location Name	Guaymus Basin
Coordinates	Lat. (^o)	27.013056	Long. (^o)	-111.519722	Alt. (m)	Depth (m)	0 to .12
Location on Map

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Source Dataset Sampling Location

Location Name

Guaymus Basin

Coordinates

Lat. (^o)

27.013056

Long. (^o)

-111.519722

Alt. (m)

Depth (m)

0 to .12

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F023017	Metagenome	211	Y
F024453	Metagenome	205	Y
F029623	Metagenome	187	Y
F040421	Metagenome	161	Y
F042112	Metagenome	158	N
F056226	Metagenome	137	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073581_10109012	F056226	AGGAGG	MRAYDILLFLVCLEASIGFIASIDLFSTTYVDPSAVQLTDWNVQEIQNQSSSPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME*
Ga0073581_10109014	F007460	AGGTGG	MDDEEGIGIGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTTIVGIDETTPFGQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQYQEEEEM*
Ga0073581_10109015	F015290	AGGAGG	MLNNKGQAGEIAVFVILVFMVAFAYIFISPVVQNIKDVTPTIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV*
Ga0073581_10109016	F024453	AGGAGG	VKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVGEEVKSVREEGREEDMDKVRSVHELAQVRRANAKQ*
Ga0073581_1010902	F019935	AGG	MPKVKETANRTVVHVGDLWKRYHRASPKTKKRWKFRIKDVGRLRYSELILCKPPNGDWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENDDLRGWKLAFKG*
Ga0073581_10109020	F042112	GGA	MTFDEYSSAFPQFEEKYVSKLAYPHLLFIQIQKIMDRIDAGGDGKEELESLKALLKPSWRGEIDVKTERCRREMEREINRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGLML*
Ga0073581_10109024	F023017	GAG	MRLKKEKREEMKQKIIEFLKNADGHIASIPMLARAIQASSPTAKSIVFELEVERKVSVVMLGGECVVKLEGG*
Ga0073581_10109026	F029623	GAG	MNTYAKYVRARFERGNLIVEISKDAFKDAETRKEATKELQQIIKTYFSIRFFIRLSIVYAFTALFCACVALLMLLK*
Ga0073581_1010905	F072934	GAGG	MVGIDIERLLADEEIREKMNEWNREKAKRRLESMKNLSEPHRRYLEKIASGEWKVW*
Ga0073581_1010907	F019588	GGAGG	MGEEKRIEEEVRGVLERLKVPYSVEIVIVDDKSGKVVFRWRRGRGNLVKGMRKTIEVLDRKIGIPVKDLLK*
Ga0073581_1010908	F040421	N/A	MRGERVRAITMLTLAFTIGFKSIILFLQHSFGFAFALLLLAWTCICFAFPDQLIGASIGQDLKLGEVIEKWVRRRELKRK*
Ga0073581_1010909	F014691	AGGAGG	MSRGIGFVSAILILIFVVVGVFTLSIAWSEIPVEPQANTSLANTSSIIPALTSFLPYLVLVVILAMAIGVFLSLVRVR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073581_101090

Overview

Ecosystem & Geography

Associated Families

Sequences