NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073581_115482

Scaffold Ga0073581_115482


Overview

Basic Information
Taxon OID3300005264 Open in IMG/M
Scaffold IDGa0073581_115482 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Texas, Austin
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5311
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location
Location NameGuaymus Basin
CoordinatesLat. (o)27.013056Long. (o)-111.519722Alt. (m)Depth (m)0 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029954Metagenome186N
F035145Metagenome172Y
F049343Metagenome146Y
F050065Metagenome145Y
F066330Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0073581_11548210F029954AGGMELKVREYKFNDGERKVEYVIPPTNTPFFSVVFSKRGGVRMIAIHQRVLEYHEAVVLISLLCGVIKNERGNGYRDGSSTLYH*
Ga0073581_11548215F066330AGGMAEGEKRKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVREAIKKAVEEVLQARSEK
Ga0073581_1154822F049343AGGAGGMEWSRLRDKLRKGEWHAFSAACFIAGVVVGKEITTLGRAEPILALTAVGAVLLAYWLALLTATIIAEIKEAPKTI*
Ga0073581_1154823F035145AGGAGGLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTVERKFITQQSTLKALIEALESVKEVMLNGMEQIER*
Ga0073581_1154824F050065GGAMNMLKATASMEQQILLAIAYLKGLLRDARRRGDKEVVRYIGEIIGVYEARLQPQNNNN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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