NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073580_108619

Scaffold Ga0073580_108619


Overview

Basic Information
Taxon OID3300005265 Open in IMG/M
Scaffold IDGa0073580_108619 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Texas, Austin
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24746
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (82.98%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Associated Families18

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location
Location NameGuaymus Basin
CoordinatesLat. (o)27.013056Long. (o)-111.519722Alt. (m)Depth (m)0 to .01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F014691Metagenome260N
F015290Metagenome255N
F017081Metagenome242Y
F019588Metagenome228N
F019935Metagenome226Y
F023017Metagenome211Y
F029623Metagenome187Y
F029954Metagenome186N
F035145Metagenome172Y
F040421Metagenome161Y
F042112Metagenome158N
F046123Metagenome151Y
F049343Metagenome146Y
F050065Metagenome145Y
F055335Metagenome138N
F066330Metagenome126N
F072934Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0073580_10861910F055335AGGAGGMRAYDILLFLVCLEATIGFVSSLHVFPADYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFFNMLVAIVAIYIPLTTVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME*
Ga0073580_10861911F017081GGAGMVERGRKWWWKGICILGTLTLFVATAQAIDITEITATETQIKITIANATSSGYIFVSPSNISFPYAYSHQGNGTYTITATFLKPNSTYYVKACDSENCSDVVSVSVSEKEQLMSQNFTSQFNTLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLITGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR*
Ga0073580_10861913F014691AGGAGGMRGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSIAMTSNIIPTLTSFLPYIALVVILAMAIGVFLSLVRGR*
Ga0073580_10861914F040421GAGGMREESVRAITMLTLAFTIGFKSIILFLQHSFGFAFALFLLTWTCICNAFPDNLIGASIGQDLKLGEVIEKWVRRRELKKK*
Ga0073580_10861915F019588GGAGGMGEEKRIEEEVREVLERLKVPYSVEIVIVDDESGKVIFRWRRGRGNLVKGMQKTIEILDRKIGIPVKDLLK*
Ga0073580_10861918F072934N/AMVEIDIDKLLADEEMRKKLNEWNRKRAEQWLKKLKNISEAHRRYLEKIASGEWEIW*
Ga0073580_10861922F019935N/AMPKIKETTNRVVVHVGDLWRRYHRASPKTKKKWIFRIKDVGRTKHSELILCKPPNGEWQTYAWSFSKKQVKKGKRKLIVYDAKAYEILQKLKEEGELRGWKLIKRWGVLTLLKVGIFRECFP*
Ga0073580_10861925F046123GAGGMEAIKMSCPYKEGSEYCWLCWNWMESAEYCLYDEDDPQREFVLIDEFKNIDPQTYKERLEWIKGLGLLSLYQAVKARTVKGQRKEQRTLSDFGVVMSHE*
Ga0073580_10861930F066330N/AMAEGKRRKEGREVVVSVALPIEEYLRLEEAVMRKHGRKRGVFSEFVREVIKKAVEEVLQARSEK*
Ga0073580_10861934F029954GAGGMELRTKEYRFNNGERKVEYVIPPTNTPFLSILFNKEGAVEMITVHRRVLEFHEAVMLMSLLCGVIKNEKT*
Ga0073580_10861935F050065GGCGGMKMFPLPEQAINMWRKKEAMNMLKATVSIEQIMLAITYLKGLLREAKRRGDEEVARYIGEIISVYEARLQPKNNNN*
Ga0073580_10861936F035145AGGAGGLEKLSAFMRRDYNLKTIITEECCDLMRVEVICFTAKTSFPLLSLTYNKLTDNFVLTIERKFITQHSTLKALIEALRGVEEVVRNDERRTERGDM*
Ga0073580_10861939F049343AGGAGGVVRWSRLRDKLKRGEWYAFSAVCFLAGVVVGKGITTLGRAEPVLVLTGVGAVLLAYWLALLTATIIAEIKEAPKTI*
Ga0073580_10861941F029623GAGMNTYAKYVRARFERGNLIVEISKDAFKDAETKKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCAFVALIIVLLK*
Ga0073580_10861943F023017GAGGMKFKREKREQMKQKILEFLKNADGHIASIPMLARAIQASPPTARSIVFELEVERKVSVVMLGGQYMVRLEEEV*
Ga0073580_10861947F042112GGAMTFDEYSSAFPQFEEKYVSKLAYPHLLFIQIQKIMDSIDAGGDGMEELENLKALLKSSWRAEIDMKTEECRKKMEKEIKRIAKVKERVGITTYREMKRAAKVRYVREYVQHVIEKLDEVGLLLIEEQ
Ga0073580_1086197F015290AGGAGGMLNNKGQAGEIAVFVILVFMIAFAYIFISPIVQNIKDVVPIVADATSWTNAQTQAMNWLFRAWYAFPLFAFIALLVWLIKRAIEKRSGEVV*
Ga0073580_1086198F007460AGGTGGMGDEEGIGIGTAIFVVMLNIVFAIIFFFLIGSVMCGILPPLTSIVGVDETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW*
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