Scaffold Ga0073580

Basic Information
Taxon OID	3300005265 Open in IMG/M
Scaffold ID	Ga0073580_114980 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Texas, Austin
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Texas, Austin

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8925
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8925

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (88.24%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location
Location Name	Guaymus Basin
Coordinates	Lat. (^o)	27.013056	Long. (^o)	-111.519722	Alt. (m)	Depth (m)	0 to .01
Location on Map

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Source Dataset Sampling Location

Location Name

Guaymus Basin

Coordinates

Lat. (^o)

27.013056

Long. (^o)

-111.519722

Alt. (m)

Depth (m)

0 to .01

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F019588	Metagenome	228	N
F024453	Metagenome	205	Y
F056226	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073580_11498011	F056226	AGGAGG	MRAYDILLFLVCLEASIGFVASLDLFSTTYVDPSAVQLTDWNVQEIQNQSSEPSLLDTATDALVRAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME*
Ga0073580_11498013	F007460	AGGTGG	MNKKGGVGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGVDETTPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW*
Ga0073580_11498014	F015290	AGGAG	MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPIVADATSWTNAQMQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV*
Ga0073580_11498015	F024453	GGAGG	MKMKVSDRDISKEQDALKFRDEIVMSFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVGEEVKSVREEGREGDMEKVRSVHELAQVRRVNAKQ*
Ga0073580_1149806	F019588	GGAGG	MSKEKRFEEEVEQIMKDLKVPFSVKVVIVDDRSGKVVFEWRRGKGNLVKGMQKTIEVVEKKIGIPVRDLLE*
Ga0073580_1149808	F014691	AGGAGG	MSRGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQANTSLANTSSIIPTLTSFLPYLALVVIIAMAIGVFLSLVRVR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073580_114980

Overview

Ecosystem & Geography

Associated Families

Sequences