NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073580_117671

Scaffold Ga0073580_117671


Overview

Basic Information
Taxon OID3300005265 Open in IMG/M
Scaffold IDGa0073580_117671 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Texas, Austin
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6642
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location
Location NameGuaymus Basin
CoordinatesLat. (o)27.013056Long. (o)-111.519722Alt. (m)Depth (m)0 to .01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014691Metagenome260N
F019588Metagenome228N
F056226Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0073580_1176712F056226AGGAGGMRAYDILLFLVCLEASIGFVASLDLFSTTYVDPSAVQLTDWNVQEIQNQSSEPSLLDIAIDGLAKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWATIQFLSGRSVKYME*
Ga0073580_1176716F014691AGGAGGVSRGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQTNTSLANTSSIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR*
Ga0073580_1176718F019588GGAGGMSEEKRFEEEVEQIMKDLKVPFSVKVVIIDDRSGKIVFEWRRGEGNLVKGVQKTIEVVEKKIGIPVRSLLK*
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