NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073580_124443

Scaffold Ga0073580_124443


Overview

Basic Information
Taxon OID3300005265 Open in IMG/M
Scaffold IDGa0073580_124443 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Texas, Austin
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5533
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location
Location NameGuaymus Basin
CoordinatesLat. (o)27.013056Long. (o)-111.519722Alt. (m)Depth (m)0 to .01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029954Metagenome186N
F035145Metagenome172Y
F049343Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0073580_12444311F029954AGGMELRTKEYKFNDGERKVEYVIPPTNTPFFSVVFSKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEEGIR*
Ga0073580_12444314F035145GGAGMLEKLSEFMRRDYNLKTIITEECCDLVGVEVICLTARTSFPLLSLTYNKHTDNFVLTIERKFITQHSTLKREGGDGKWWNGAD*
Ga0073580_12444315F049343AGGAGGMVEWGRLRDRLKKGEWYAFSAVCFIAGVVAGKGITVLGRAEPVLALTAVGAVLLAYWLALLTATIIAEIKEAPKTI*
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