Scaffold Ga0073580_126904

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073580_126904

Scaffold Ga0073580_126904

Overview

Basic Information
Taxon OID	3300005265 Open in IMG/M
Scaffold ID	Ga0073580_126904 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Texas, Austin
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6003
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Source Dataset Sampling Location
Location Name	Guaymus Basin
Coordinates	Lat. (^o)	27.013056	Long. (^o)	-111.519722	Alt. (m)		Depth (m)	0 to .01
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055334	Metagenome	138	N
F084957	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073580_1269043	F084957	N/A	MKIEDYKKKNTKRVKCPSGLEVTVNNITPYTLLRIVDKLGINPTREEVYTKPVIDALFKAFLKEPVIGKDIEIEDFLREDYIFLHNLIFEKVTLPEE*
Ga0073580_1269048	F055334	AGG	MTSLVDKLNSVMDTLKTEIDDALSGYKVMHFLRFPTATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMEKLRTLRHDDSKWYELDYKGGIDLEYSPIEKWVLQSAVVHVKVEA*

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