NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065703_1019588

Scaffold Ga0065703_1019588


Overview

Basic Information
Taxon OID3300005272 Open in IMG/M
Scaffold IDGa0065703_1019588 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2703
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameCentral Sands area of central Wisconsin
CoordinatesLat. (o)44.168815Long. (o)-89.633871Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005849Metagenome388Y

Sequences

Protein IDFamilyRBSSequence
Ga0065703_10195881F005849N/AGGYFNTWGKPKVLLDDPRFNRNYDFVFSGFEKALIGDVPAFEEGAAKLDALLSHLEDNYKTITIVTHGKGGLLAMRTLLNRAKDFPKKQPYRIHRIVMFSPPTENISLTAHPEIAKQLADQGADIVQIQTSTEAELAKVKEDLKAMRNPQDPPAHARLEAFTRDVSEHLYVINAEHDELVDVGPNGEKIVSEGIRKISELPTIGPPRLVTLRYADIGGTEEDARQKKSGVKNPAYAHRILVKMGDQDDFSFFDRFEQLLFDRIGVPPRSLSANVEQIRQSAFDRINSTIFEMNRFVVDKEPMVGLCWRNIADAVAAKLKNVPEPQKQKQTEDLVKQIYYVYIVLDQYAQLDDLRNRGYMSPNDPKIIEWQSSNLPNLIGSDVGKWMLENKLMDYYSEQMIKDLHQALERVEKPAVSAQ*

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