Scaffold Ga0065724_113561

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065724_113561

Scaffold Ga0065724_113561

Overview

Basic Information
Taxon OID	3300005274 Open in IMG/M
Scaffold ID	Ga0065724_113561 Open in IMG/M
Source Dataset Name	Thermophilic enriched microbial communities from mini bioreactor at UC Davis - Sample SG0.5JP960
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1038
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Switchgrass Adapted Compost → Switchgrass Adapted Compost Microbial Communities From Mini Bioreactor At Uc Davis

Source Dataset Sampling Location
Location Name	University of California, Davis, USA
Coordinates	Lat. (^o)	38.546	Long. (^o)	-121.7533	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036417	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065724_1135612	F036417	N/A	MIQPARVPLRTRIPTVLVRLATDEGEIAFRARWRRSARELHHIILFKMRQGRPLWFQDEWGHDLVFRPECVWAAMVDGR*

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