NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065696_1217021

Scaffold Ga0065696_1217021


Overview

Basic Information
Taxon OID3300005280 Open in IMG/M
Scaffold IDGa0065696_1217021 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial community from Michigan, USA - East Lansing bulk soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → unclassified Bacillus (in: Bacteria) → Bacillus sp. NSP9.1(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere Bulk Soil → Switchgrass Rhizosphere Bulk Soil Microbial Community From Michigan, Us

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.704677Long. (o)-84.468818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025254Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0065696_12170211F025254N/ASVREMMVLIVEQLKSYVDGDEDALLELTQVLDSGRYDVEIVNQAFEMIFRALEPFAHEDFSHDASTLRKSVRVPTGSERALLPAAAYAYLFGLVESGKVTPEQFEEIMNRAREEGPALDTQAKAEELATSVLIRWFDDEHGVDFDPASTPRSTEVIHLSPTKKSVK
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