Scaffold Ga0065696_1221133

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065696_1221133

Scaffold Ga0065696_1221133

Overview

Basic Information
Taxon OID	3300005280 Open in IMG/M
Scaffold ID	Ga0065696_1221133 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial community from Michigan, USA - East Lansing bulk soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	512
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere Bulk Soil → Switchgrass Rhizosphere Bulk Soil Microbial Community From Michigan, Us

Source Dataset Sampling Location
Location Name	East Lansing, MI
Coordinates	Lat. (^o)	42.704677	Long. (^o)	-84.468818	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077115	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065696_12211332	F077115	N/A	PPARRSPGEYLGGRWDWGMTLFVWTSDAAVGPVWTDLVTDRGYVPQRLTREAFLSVLRRAGDVGGLLLDGELDDTGHVIRAEADQLIQRSEALSVLAR*

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