NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065714_10098976

Scaffold Ga0065714_10098976


Overview

Basic Information
Taxon OID3300005288 Open in IMG/M
Scaffold IDGa0065714_10098976 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1697
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan State University
CoordinatesLat. (o)42.406189Long. (o)-85.40016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032135Metagenome180Y
F046806Metagenome150N
F094834Metagenome105Y
F104372Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0065714_100989762F104372GAGGVRDMTVTRASRRGAYTLPVEHGRPRTPKPGFEPISADEWAEIIHLARQQRTEEAITAYARRRTA*
Ga0065714_100989763F046806AGGAGGMSPVSPMHAAWLVRRVCGKHVEEAPANETGGEYVARSIRSCAALTATLGARVNPIFMHEVIRLLEELHEVHAGTHADLDQNAALTINTAPDLIDRLQVQISGAVNELLAHTEPLKERVAA
Ga0065714_100989766F094834GGAGMSHLPTCRTRKELTGNVWVYYSDPDRNRTDQSHTDAYTEENQ*
Ga0065714_100989768F032135AGGAGGMTTPDPLDPAEQAAYRELDQTRRTGCAPNCIGKQDDAMTTPLQLEDIE*
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