NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065704_10190855

Scaffold Ga0065704_10190855


Overview

Basic Information
Taxon OID3300005289 Open in IMG/M
Scaffold IDGa0065704_10190855 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1190
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.794771Long. (o)-84.393804Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055839Metagenome / Metatranscriptome138Y
F066401Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0065704_101908551F066401AGGAMKRAVLVACACLLAAPVAAQTGAADKKLLKGTARTMVEDRTRQDFEEAKNKVSQRDKDAMDAIKILFYNKAYIYYACIVSIGREKFSDKAIAECVQEPMKELIAGSRNAKEYSKNPKAEKCETNARLAKEEADFPPYAFLAGDDVHLYDFKAMRTCLTSR*
Ga0065704_101908552F055839GGAMRVVESMKHLAPALALILVGSAAAKAADINFGEVRTRYQIRNELTAWERLRPWDVDWRHTYVWQHGRTLQTEFAPPGCYITRLVTTPSGTQLQELFIC*
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