NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065712_10068407

Scaffold Ga0065712_10068407


Overview

Basic Information
Taxon OID3300005290 Open in IMG/M
Scaffold IDGa0065712_10068407 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10868
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan State University
CoordinatesLat. (o)42.406189Long. (o)-85.40016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036462Metagenome / Metatranscriptome170Y
F042607Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0065712_100684071F036462AGAAGGMSQQVRLGDLLGSSSIEDFRSFDMTEVQEVLSHLRETDAIDLSHAEFLQQQALRGADILAEHLSKIVKTVAYLEAELNKTRNKVSLEYAAPDGARTTVDMKKWAGECSPEVVKVQEQLADAKGAKIALEKKFDILIKSHHHFKD
Ga0065712_100684072F042607AGAAGGMSIRIIDNKKVDVTEDEWAMYEKIVKSYTTDTNKGEDLFKDLFETDPNGIIIFLKPPSKFRTSFEVFLFLMSLMQHQHLRLMHSQVEEMVAQVKEKLKDK*
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