NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065715_10001689

Scaffold Ga0065715_10001689


Overview

Basic Information
Taxon OID3300005293 Open in IMG/M
Scaffold IDGa0065715_10001689 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5756
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan State University
CoordinatesLat. (o)42.406189Long. (o)-85.40016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027640Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0065715_100016897F027640AGGAMRSTICCAVFGLLISSEAVLPEAHAAPRPSARLRVRVVGVRWFGARPPMFIPYCVPVPFPYPVLDPVPYPVWNFITPSPAYVFVGSASPSHPQLVFKDGTTYTVTDYWRVDDQLHFITIEEGGTKSVPHTVPFGDLDVQRTTDTNAAQGFRFVVRGEPIEQWLEHHSQRAPERHPRDNGAG*
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