Scaffold Ga0065715_11133125

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065715_11133125

Scaffold Ga0065715_11133125

Overview

Basic Information
Taxon OID	3300005293 Open in IMG/M
Scaffold ID	Ga0065715_11133125 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	512
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location Name	Kellogg Biological Station, Michigan State University
Coordinates	Lat. (^o)	42.406189	Long. (^o)	-85.40016	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015101	Metagenome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065715_111331251	F015101	N/A	NKVNRLVTRVDLPPRATPLGQAIMRRAGEPRAPGVRANGNQDTLPRPQHLGAYAPLVAAMREELEHFVTSHVRMHLAIAEHDRYLLTSIEIECVAGDESRELLQRFMREFKPEQIKLYLAKEVIGRLPNASAIDLAHFGGLNAAPGDGADEAYGELLAELRRTEPRAGQK

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