NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065705_10007123

Scaffold Ga0065705_10007123


Overview

Basic Information
Taxon OID3300005294 Open in IMG/M
Scaffold IDGa0065705_10007123 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3835
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.794771Long. (o)-84.393804Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096991Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0065705_100071232F096991AGGAMPSQAGVCWLDVCAPFIVNDPAAVRSEVFLTSDTFFGAKGYQGGQDSTEYKIYLYDSAGKPIGTDGIAKRLIVPAMQTTALNVRDLLGSDEKFWGGMRIRLRPNSREPMHASDLFSSAFIRWQTNNSFDNVHANPDPLQWQRPTAFFYSMPFPPLAEYEALFSLFNPNAERSAGSITIYDQMGVALRSASYQLAPGASLLFDLRRAEFAEDPGTIFGARREKNESASPGLTTDGGTIAVANQEGAQKAFGYLMLKRAGGVRFSVEHPIHQAPFAARPAAAPFDSAGRFRAKNILYTPLVFRSKQIGGVTLNSRFHFSSGAPLEEHLWLNPLITDPAGNVVWQTTAETTLPPGIPQKQIERKVIKLGGMQSCVFDCAQLPLPTRFAGGLSLAVAPTTNHTLMKVEISAREWGAHAFTHFRPGLQSARGYQLPKQRESLATDYIASGARYEQDGGRKVRDEVIGIINIDDQAIAGHPALEIFGAGGLLARIELDEVPPFGCRHYLLSELASEKIRARDLTLRLVDERATLLMSVVHLDYARRDLALDHGSDRFSTFNDYPCNPST*
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