Scaffold Ga0065705_10282777

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065705_10282777

Scaffold Ga0065705_10282777

Overview

Basic Information
Taxon OID	3300005294 Open in IMG/M
Scaffold ID	Ga0065705_10282777 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1090
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location Name	East Lansing, MI
Coordinates	Lat. (^o)	42.794771	Long. (^o)	-84.393804	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036442	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065705_102827772	F036442	GGAGG	VRHGRRWWLLLGVLGALAMAPRAAEAQEFDLGAGADYWTQSPGMGIFSFGLDALWRVAPGFQLGLKPGFFLTTSGDIPAGIPLDFKVRVNVSSVYVDGFVGPWFFFKGDAVRIHVGMGAGLRMGRLLLGGEVSYLNNGATFGGRIGFQL*

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