Scaffold Ga0065707_10293162

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065707_10293162

Scaffold Ga0065707_10293162

Overview

Basic Information
Taxon OID	3300005295 Open in IMG/M
Scaffold ID	Ga0065707_10293162 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1020
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location Name	East Lansing, MI
Coordinates	Lat. (^o)	42.794771	Long. (^o)	-84.393804	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030494	Metagenome	185	Y
F035366	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065707_102931621	F030494	AGG	MERVVTGARDARRQADLVGSPVFWLTIALTLCALVPVALFPLMRAWLGCAILLMWTCFFSANAVRSRRTHSIISAPVYLLAAALLAGNAWGWVAVDIWMVWLLGGGIIAANLSE
Ga0065707_102931622	F035366	N/A	MTITNKNDANKAAVLERVRAVRSALENEPQNPSTTRALQQCDRLELSITQFHAEGLRFAAFTLLRMVFSQGTVFTEPVHIATQNLKSALEAAGYPH*

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