NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071330_1039367

Scaffold Ga0071330_1039367


Overview

Basic Information
Taxon OID3300005298 Open in IMG/M
Scaffold IDGa0071330_1039367 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment Sediment 77C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)796
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Source Dataset Sampling Location
Location NameGreat Boiling Spring, Nevada
CoordinatesLat. (o)40.71458Long. (o)-119.369659Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036249Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0071330_10393671F036249N/AAGVSNFNAPMSIPNDTGLSAVYTWGWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSTVAQFGQVVANDLFSNTDATLGKIAGIPYAVDRPTTTPNSFGGISRSNTTNPWWRCVVVDANNNPLTLQWLAQAYNLATENGGISPDIIVMPTDLFTAFEAQLLATQQYRQDDEIARAGFVGYLFKAATVLFDPRVPNNTVFIINSKDLMLVSQTDRPSAEPVEFPDRLVRGYKHGWALALVAKRLNSHARINNITP*
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Institute for Fundamental Biomedical Research
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