NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074198_1001402

Scaffold Ga0074198_1001402


Overview

Basic Information
Taxon OID3300005323 Open in IMG/M
Scaffold IDGa0074198_1001402 Open in IMG/M
Source Dataset NameBioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15991
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (96.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location NameEspanola, New Mexico, United States
CoordinatesLat. (o)35.992Long. (o)-106.0797Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038519Metagenome165Y
F060548Metagenome132Y
F094797Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0074198_100140212F060548AGGAGMSTVTNRPKQRRVTDFVDMQVATLIRNHACEELCIEDLVAVALKEMPGFEWKDDKIRHSVNRLEKRGKMASKYVVRSKRLCRVPYLI*
Ga0074198_100140215F094797GGAGGVSGSDALEDLVDPGDSDTETFLPTPSEARALSRDKGFETIWKGGILTGCHLVLKPQISFNAKGRLLYNGKPYSRGIWGWRPPKFIRLQGREAKEEPNSRNSHPEIYLTTLNGAVLKLDACPCGGELVKDNCECLYCRDCGEVYSHY*
Ga0074198_10014029F038519GGAGGMKMYGIATDLGDDWAGPYVDQELLKKTLAIIQKVDPNAEIVSKETDPFSEQVLAGLLPFRIHVDLVDGIPQLPADVQITWPPGEMEGIQFGNLECREYFVWAESEKAALRKLATLNKAAPNYNPKAAAMCEE*
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