Scaffold Ga0070670

Basic Information
Taxon OID	3300005331 Open in IMG/M
Scaffold ID	Ga0070670_100000272 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005331 Open in IMG/M

Scaffold ID

Ga0070670_100000272 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45908
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (68.18%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

45908

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (68.18%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001288	Metagenome / Metatranscriptome	730	Y
F042398	Metagenome	158	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0070670_1000002723	F042398	N/A	MHRFNHRRCTACGELTVKPLQRFLGGWFFIRCPNCQRDLRVDPQHGQRWVLLTAFVLIGAAAISGAAITGHTLVLVGAGAFACVLLYVWEFLLTRRSPLEPVTSAEAREYRRNWVLTAVATVLATAAIVFAATQS*
Ga0070670_10000027233	F001288	AGG	VLEPAFSWIRSFRDPFRNSSAAAQWISTLPTSDTMALQKEALDLVASFPDARRVIGPNQAEALLRVDARVEPVLAQLAQQYAINYQKSTEVETRLWHAVFDLVKAFAAAYAAVLRVGYPRAAHKRWESLVPWVLVRLVHYRGIDAKFRLFRYGTWVPAQWREFHELYEFARARGWQRNELAYGAGMFSRPGVCVEQEYLKALLLMRLDSGNFTPDQVEWVARQLDGWAASLMLVPPPGAGATFLVDLTGSQGLRRHDKVPSGDRVLLLDAGPIYTQIVERMRWLPERDDEAPRQDDHPPPREQRLLLMRLASLYGPDAIAQSPRATRFVTNADIRVVVGLAPLMRAIAEIDRLPDAARTPAVTASFDEVTDMVTPNANADIHLRRIRGVVWKMEDRSDTGCRLTAPAKEAPGKLGEILALKEGDSWALAVVRRMQRHQVDEATVGVEIVGRRLVRVLLRNWVTPSDSARGGADKPFFGIYLPAHPENRQMAQRSLIGPDERFVTGGMVELDTGTARYLIRFTQTLERQPGWAWTLFSAVRKLSS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070670_100000272

Overview

Ecosystem & Geography

Associated Families

Sequences