NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066388_100268591

Scaffold Ga0066388_100268591


Overview

Basic Information
Taxon OID3300005332 Open in IMG/M
Scaffold IDGa0066388_100268591 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2347
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011437Metagenome / Metatranscriptome291Y
F083911Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0066388_1002685912F083911GGAMNSHLLYFLHREVAMLGKIVMTLLAFSSAALAQQQQCQLECTLVTQSGEARVTKSCYALDAEQCGLVAKANTGGQQRCRGYLTTNCVNDR*
Ga0066388_1002685914F011437N/AMLQAPSKGPVTEQSMDKLVLGLATLALSAGAASAQALYPSDGYAPYGYGYIAPAPLYDYAGPASATPNGYGPLIYTPRLYIPTPAFPAPPAEPGYYTAQSVVVSQPIYDYAPSYWGANRRWPRCRH*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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