NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066388_100614711

Scaffold Ga0066388_100614711


Overview

Basic Information
Taxon OID3300005332 Open in IMG/M
Scaffold IDGa0066388_100614711 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000198Metagenome / Metatranscriptome1648Y
F012483Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0066388_1006147112F012483AGGGGGVSGFRDYQSVIQAGVGRGDASRRVPLDPEEVRALFGRVVRQVWTPAEIDVLDRAACSAML
Ga0066388_1006147113F000198AGGVTTISPCLVVLRGGVVIEDPLSVVLGFLARWRLDVSNPSQSASFGEPDLRLANRGGARISAAQIAVILQRRAAIERALGAIASDASLSGEASSVPWLPLRQLFDAFAEIPGVGFAKMTKALHPKRPALIPMLDSIVQKYLADDDPGAQAPFGRRALELVRGYKSDLDRNSAAVRAIRQELAGRGYELTEVRILDLLILSVQAVA*
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