Scaffold Ga0066388_101058862

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066388_101058862

Scaffold Ga0066388_101058862

Overview

Basic Information
Taxon OID	3300005332 Open in IMG/M
Scaffold ID	Ga0066388_101058862 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1367
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000674	Metagenome / Metatranscriptome	941	Y
F000778	Metagenome / Metatranscriptome	895	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066388_1010588622	F000674	GAG	MNLRSSVAVTAMLAAHPTAAQDHRFETDPVVTVRENFVACDVLSQLQRVMDHPRFLLTGECEPLSSGRRVRIYANRGPYACIYPEDTITPCKWTHEKVLSK*
Ga0066388_1010588623	F000778	N/A	VSGTPEFGVRFSLMSSDRVIVDAIKMAQRLLWQNLPPTHSLPDATTVIRFRDLVRSPAIQSALERSSDTFPAFTLRAVESVLADQSQTDREIISRLWDVLDDPDLKKQALGPPQNSRIAFGPYPKRR*

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