NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066388_101963341

Scaffold Ga0066388_101963341


Overview

Basic Information
Taxon OID3300005332 Open in IMG/M
Scaffold IDGa0066388_101963341 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1047
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029040Metagenome / Metatranscriptome189Y
F033565Metagenome / Metatranscriptome177Y
F034672Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0066388_1019633411F033565N/AVSEPPIAAPDEHAQLVEADQRFRAALGQAIAAGGERIEAVKATVQLKRRTKLAR*
Ga0066388_1019633412F034672GAGMALKKLLLTSIAALPLLTGAAHADGRLPEAMLGNWCWVEGGDEQNWNQQIFARVPPEGCHGGDSLIRIEQNGIEGEGSCTFGKIEQTGPNDFLIYTYCDDDTNGSTRFEIIDGRLVITAL
Ga0066388_1019633413F029040GAGMKKTLLSGIAALFLATGTAYADSEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEAEEIPDILKAIGVIKKCKAFYQCLEDRDRGKVKHCYENDRRWR*
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