NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070680_100665502

Scaffold Ga0070680_100665502


Overview

Basic Information
Taxon OID3300005336 Open in IMG/M
Scaffold IDGa0070680_100665502 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)895
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084427Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0070680_1006655022F084427GGCGGVALVAFAAGCGGSNPIGPMPSPSPSPTAQPGGPITGRYTLSITPSASCAMPRTPITFLMTGADAGVTTHPGVQVLLDPNGFRLELEAVYESFAIHGGLGTKNDQEGAVSEQGQRVWIHAIAAGPVLRSTDSRGEVLTGTLAGYLALATVGGFEGELGTCSAP
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