NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070682_100390929

Scaffold Ga0070682_100390929


Overview

Basic Information
Taxon OID3300005337 Open in IMG/M
Scaffold IDGa0070682_100390929 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1049
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008904Metagenome326Y
F076052Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0070682_1003909291F008904GAGGVFKFAAVLLLLSWPASAEDRLYYRFSQWAGLQEDDRAAYISDLLDTLAMAATEPAQRTAQHYSQCITRSRLTTRQLANYLREYGRARPELQANSVQDAMNNYLNALCGRPAD*
Ga0070682_1003909292F076052GGCGGMIETLVRAAIDTTKDESAKPRLRRCLPALLSAVGHWDGSAAGEFVMAAATPQAAFMFCADEWPDVDESAFQTHEVARALVAAVESSAKNKSDVILGATAVLLGEQGLAAQRAEHDRIAGEGVVPLIVTLVEHDGKSVALMVTVIPMAPATLH*

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