NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068868_100000395

Scaffold Ga0068868_100000395


Overview

Basic Information
Taxon OID3300005338 Open in IMG/M
Scaffold IDGa0068868_100000395 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29642
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F013826Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0068868_1000003956F013826N/AMAVCWRCPRCGEVSCEDDAKAEGLPLACDHCERPFLPAETQCTVCDAPNPWSRRDSLHFWCRECGNTQTFYGFTTQAGTTTTGASGPR*
Ga0068868_1000003958F002324GGAGGMGEIKLFQICYEGDLTVEVSQIMRRLGAEPNFDQSWQVWLPEGRHAAPLVRYLRSKLGDDARLLVACAQFTTARDFLLVRHSLTPGADYSELHEALDRLGVFVPLPFDSTFVIQSDDRTDVQTLGAALSELCPDDSLMINGISHDWAFCDAGMSRMYVADAVEELTFRTF*
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