NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068868_100020552

Scaffold Ga0068868_100020552


Overview

Basic Information
Taxon OID3300005338 Open in IMG/M
Scaffold IDGa0068868_100020552 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4964
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023978Metagenome208Y
F083332Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0068868_1000205522F083332N/AMSDIDFNRLIKDIIRAARGEATGIPGGITPFGENNKLSITLKLEVTINKNSAQVHQVNQKGSRRLVLLTIDDHE*
Ga0068868_1000205526F023978N/AMKKNVIFLLAVFASLGLFAKTPVNAADPVLGVFAKTLKGEKVSPLIESKFKKQYGNPANVSWSVVDDASDVRITIATFTEEGEQKEVYYYDDGEVYGIGKTIRRDHLPENVTKSISARFTSGVIQTAYEFNERNSPTRYFVRVVTPRHSMIVSANEFGETRVYQKERLKHMFD*
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