Basic Information | |
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Taxon OID | 3300005343 Open in IMG/M |
Scaffold ID | Ga0070687_100061338 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1987 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan, Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021157 | Metagenome / Metatranscriptome | 220 | N |
F036743 | Metagenome / Metatranscriptome | 169 | N |
F044677 | Metagenome / Metatranscriptome | 154 | N |
Protein ID | Family | RBS | Sequence |
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Ga0070687_1000613381 | F044677 | GGAGG | MTAKTGLFTVAAAAAIVTFAAAGWSIPQSKARIAGAPGQVDTFKMMTTGKQLPSEHFADY |
Ga0070687_1000613384 | F036743 | GGAG | LGGYARVALVSLTLSAGFGLAGCAAIDDLKVSIFQWLDPVNFTGEGEELLGYAPETRLIPPAEIPKQAAKAPSKRIKPATRKLQRPQTVVLPPKKPPISDSPETATPGETEGQSAWPHSMRSRTPNPEAPPSFDGRFCAECWGLPAKAE* |
Ga0070687_1000613385 | F021157 | N/A | ACGLFPSLSWCCYRVEWRPGQKFHDTHRDVGDAVIEVWQDRFVLAADPGGVEYDAGQTDALMAARFKKRSAEAAQDTSRAAISSLSGLICGFPS* |
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