NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070661_100000004

Scaffold Ga0070661_100000004


Overview

Basic Information
Taxon OID3300005344 Open in IMG/M
Scaffold IDGa0070661_100000004 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)243876
Total Scaffold Genes258 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)184 (71.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016854Metagenome / Metatranscriptome244Y
F031439Metagenome / Metatranscriptome182Y
F081191Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0070661_10000000454F031439AGGMYLIPLVLIVLLALIAVAWSPIFALIFFVIAFVGFLGYVGLSRRADEKLAPPEQPGRQPQHEAHGGDTGMWGERKA*
Ga0070661_10000000480F016854AGGMARSDVKSLPKPDEVWLSCPPYLLMARIVEVDLVSEPPVVSYELHDDDGSLLHEVEHATLDHGWWQTFQRLEPRFG*
Ga0070661_10000000482F081191N/AMSPPRRLPSPEVLVAAIVELADDGFCRRSELALKFPGLGARDLRRALRRAIAQGFVIERRGPDGLFHLAVSSEGWDLHRSG*
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