NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0074242_10194656

Scaffold Ga0074242_10194656


Overview

Basic Information
Taxon OID3300005346 Open in IMG/M
Scaffold IDGa0074242_10194656 Open in IMG/M
Source Dataset NameSaline sediment microbial community from Etoliko Lagoon, Greece
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)13122
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (48.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameEtoliko Lagoon, Greece
CoordinatesLat. (o)38.482158Long. (o)21.313175Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013839Metagenome / Metatranscriptome268Y
F041166Metagenome160Y
F093531Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0074242_1019465610F013839AGGAGLASTSTNKSPCLIDRPFLRGAKFTSATTTVDASNPNFTDLIQLVRVGDLPSEDAALVEDIFLVSNESYQDDAGMYTAAFGIYVYAPKPSSAFNFSCHDDW*
Ga0074242_1019465611F041166N/AMIGKFEVGLSGATEGLLQRIELPSINAPVPQVGDTNLARSVQIGKMEGLYLEKGYILCVGYLGEGPNAVSGSLSASGVTWLASGRILLICGQEKGIR*
Ga0074242_1019465612F093531GGAMGMRMVAIRPRDSFSFLDYGYSIQSVTQVDTDLYAVQLNSNFGPPVSFFEGEVLSDRFDANGIEKTSFNNYTVVGVGNGTTPLAPGFAPIYNSLFISTSIDNSWSVVDNETLAAPAVSLPTPGEYFTTEMRFGCNCPDYLAREDFNLYKYNLKRRYPYTTPQDLKPGTYDAGDETSPQRRQSTRDFPGFCS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.