NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0070668_100020112

Scaffold Ga0070668_100020112


Overview

Basic Information
Taxon OID3300005347 Open in IMG/M
Scaffold IDGa0070668_100020112 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5033
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009234Metagenome / Metatranscriptome321Y
F040092Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0070668_1000201121F009234GGAMGIVGPVDHSVSRDSDRFLAVGAVTQSDRLEIELVQRPDTPAAILIKWPPQPTVTDPAKLTATIAAIVRVLGMAQIELAARRASGKLKRRRQTHEVVLRRS*
Ga0070668_1000201124F040092GAGVLLALLGVALMLAAFRVDTPMLSGGSPVTWHGWVHGIAFLLIITMGVLAPLTMALAVRGDAGWRPIGVVSLVASGLFIVFLFVPWGNASFLMAIVTVFLWIASVAIRLATHHS*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.