NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070669_100174416

Scaffold Ga0070669_100174416


Overview

Basic Information
Taxon OID3300005353 Open in IMG/M
Scaffold IDGa0070669_100174416 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1678
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001995Metagenome / Metatranscriptome607Y
F043106Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0070669_1001744161F001995N/AMLDEGFWAEIKVGGEHLRLFAERSALGVQASVYNVNTKSWIAPSELVDDVEQGKEK
Ga0070669_1001744162F043106GGAMAAHELSTGFETPRELQEFNAAWETLGVLAEEIWPLPRRTFQFMLSESHAATMVRSRDDVVEFERKTGLPVRYGPDFMDWVRDECAREGTPIKQLNRSLHEACHLVAGEIAGFPHTETIGPTFACTLEEAAGVLKITHVRYEPAVVAHDPDSAKRFYTEKPVEYAAMLLAPLCVMPRLMASTTEDSHFVPDIVALMRHVPGQQDTAGLEAAAALTDGPQFLERVRLCARTLRPMIRTGGIVELPRKIGGERARSASVGSMDFNP*
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