NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070671_100876131

Scaffold Ga0070671_100876131


Overview

Basic Information
Taxon OID3300005355 Open in IMG/M
Scaffold IDGa0070671_100876131 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)784
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005075Metagenome / Metatranscriptome413Y
F051771Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0070671_1008761311F051771N/AAQMAQTRGPALQREMTQELAAWDAATARGERPMPPTFRIPGAERPPTGVWDAAVATDSIELVNPDLFYELARFYNRAQSAGDLYQRYASGAEVDIWPRLRQGPSAFWHGSELQPGVATDVQRLREFRERQGELSREADQLLIRLRRVSRN*
Ga0070671_1008761312F005075N/ARSSRTVGTALSDVLTMVEAANVLGVLAAVMLLMAVVAWMKLIRGPLMQRTDGRTGISDQREFASELLFWAAGLSSVAALLAIAGWIFI*
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