NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070674_100057955

Scaffold Ga0070674_100057955


Overview

Basic Information
Taxon OID3300005356 Open in IMG/M
Scaffold IDGa0070674_100057955 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2691
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006922Metagenome / Metatranscriptome362Y
F009148Metagenome / Metatranscriptome322Y
F010023Metagenome / Metatranscriptome309Y

Sequences

Protein IDFamilyRBSSequence
Ga0070674_1000579553F006922AGGMSFYKLRRNELDPLDHEILERAFEAAWEAIKGSDRHSDTESDEELELALRRELIEIARLNGVSDPETLKDVLLVRAPPWRAPRRDAPD*
Ga0070674_1000579554F010023GAGGMTNLKRIQAKARKLARSGKFHGWRPIAFELRFEEGHEEAREWLHDAATQDELERLCQTAREAKNEAA*
Ga0070674_1000579555F009148GGAGGMPFEAYSAYFRPDELGILAAAYDAAWQDLWTERLTLGQEQTSVLKKNLAQIILASACNGKRDVEQLKEVALRGIS
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