NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0008090_10120138

Scaffold Ga0008090_10120138


Overview

Basic Information
Taxon OID3300005363 Open in IMG/M
Scaffold IDGa0008090_10120138 Open in IMG/M
Source Dataset NameTropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)879
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Source Dataset Sampling Location
Location NameAmazon Forest, Brazil
CoordinatesLat. (o)-10.0Long. (o)-62.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001239Metagenome / Metatranscriptome740Y
F027001Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0008090_101201381F001239GGAGLKIQTILPLALASLVFGCGGQLSLDEAGLLDAVAFVTGGQKEGAIPQGFETRWRRTVHGREIEYQSIGPNAGFGQADDPHRDSRHVRIGVNITSPTKCVFKTVVTTEYSRGARESFGDATSEVTTLDFNKVRRFDIEDGDSPNVVIEGSAWMCKQGGCQDIVKIGISAPRQEEARA
Ga0008090_101201382F027001N/ASRFYSHCVVIHFAAHPPSKFWPKGVTAYSRAEWAGSIALAERSARRWRKEQYVEVIEILEARQV*
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