NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0008090_10159196

Scaffold Ga0008090_10159196


Overview

Basic Information
Taxon OID3300005363 Open in IMG/M
Scaffold IDGa0008090_10159196 Open in IMG/M
Source Dataset NameTropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2473
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Source Dataset Sampling Location
Location NameAmazon Forest, Brazil
CoordinatesLat. (o)-10.0Long. (o)-62.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000777Metagenome / Metatranscriptome895Y
F000794Metagenome / Metatranscriptome889Y
F017863Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0008090_101591962F000777GAGGVRNREFITLFVGVAAAWSLVAHAQKSETLGATNATTATLPQIEVVRVKPVESTPTNLRLSDDLIDLMSGFSLSSGQAIGGAWGIPLRPPTPFDERYGQW*
Ga0008090_101591963F017863AGGMTVLVEPFASVYDNRSRLGVILARRGRGFEAYAADDHSLGLFPSSRKAAAAITTTRPWFTQTSAENKPERNQQLPSG*
Ga0008090_101591964F000794N/AMMEKPTTKLSAQDRVILFCVATGIHHDAVGIIDQAMRSMAIRGFIAHNRESGAYTLTDSGRATLTGILEDAQIGITA*
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