Scaffold Ga0008090_15890738

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0008090_15890738

Scaffold Ga0008090_15890738

Overview

Basic Information
Taxon OID	3300005363 Open in IMG/M
Scaffold ID	Ga0008090_15890738 Open in IMG/M
Source Dataset Name	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1242
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Source Dataset Sampling Location
Location Name	Amazon Forest, Brazil
Coordinates	Lat. (^o)	-10.0	Long. (^o)	-62.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002957	Metagenome / Metatranscriptome	517	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0008090_158907382	F002957	AGG	MSLINDADPDALIARLARPLASAADREAFRAAAQDALARVPCWGEGAIYRAVASLQRAFRDPPSDRGAHWGIEQEFGPSKLRDAPAIEYGGDRRHVRYRKHAR*

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