NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070673_100517959

Scaffold Ga0070673_100517959


Overview

Basic Information
Taxon OID3300005364 Open in IMG/M
Scaffold IDGa0070673_100517959 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1080
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001131Metagenome / Metatranscriptome768Y
F013213Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0070673_1005179591F013213N/AMKSWVLHRVAGRSDLPPRDSRHLHEPDLDIDAGQRHGDAGAAADPLRAGADLGVYAPLIGAVRDELEHFVASHVRLHVVIAERDRFLLTSVGVRSPGGAEARELLRQFMHEFRPEQVKRYLAREVIGRLPNAAVIDLSQFAGLADLENGERPGDDGEYRELLAALRTTPALPIARPYEVSVIGRWSEADPASASTSSATTPARVRRLDTPTTPLAGRRVEFDIDDGAGPRRAVLPAVVPGRRYAIGKD
Ga0070673_1005179592F001131N/AESLPPPLVWTFDGPFERCLDDLDDSLRRAIVLIGDVARVALLIDLSLPALLARVRAGDRVQPAWGRFTERIAGYGLPTFPRVRHLRAPGPLATLVVAYRS*
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