NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066858_10104342

Scaffold Ga0066858_10104342


Overview

Basic Information
Taxon OID3300005398 Open in IMG/M
Scaffold IDGa0066858_10104342 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)827
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005580Metagenome396Y
F010737Metagenome300N

Sequences

Protein IDFamilyRBSSequence
Ga0066858_101043421F005580N/ASTRKGGVRKTARRAYVRKNNPKRSNMKKSIPHPSVTGMASGLAIAAYLNAGTPTTTKTGTSLGSVTVMGDGVVKDVTDGELGKAFNTLAGNAINMISSDQGRKTLVTASGIALLGAFARKQFPQLKLGGSKLYFRI*
Ga0066858_101043422F010737N/AMVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGSSRISRIDVAVDAPDTKGFVLAGRLLGSNMSEQNLTLAGSSGDIADAGGTPQFNMIPTNFSVAGVNNIDLQVAFQFTTGTPTASGLSVTLYFE*

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