NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070703_10001093

Scaffold Ga0070703_10001093


Overview

Basic Information
Taxon OID3300005406 Open in IMG/M
Scaffold IDGa0070703_10001093 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8430
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000443Metagenome / Metatranscriptome1132Y
F005160Metagenome / Metatranscriptome410Y

Sequences

Protein IDFamilyRBSSequence
Ga0070703_1000109311F000443N/AMSAQTAGQIGANLSWSKVDALTSYERLTGEIQVRGGRLRETINDPEPLFHMRNVSAEPLLPGAVPLSGVPEGLFNKNFIGGIRTIEPEPPPPDMVADMIRRYVMFQGSTYMITGAAEFPAATEPAMHTEILMKSRYFAMVDVTVTIFGVQGKSWTQPNIWVNRDLMVAVFLG*
Ga0070703_100010937F005160GGAVRVPLPSAILRMLGFAVAAGLGMAGVQPVVAASTGAIDMQWAFGLTAPAILTAGLVLGAARMFDRGDTVQPPWYSAWLLLPGSFLLAGAAAMCIFGALVQLSLIPWTMWVLLISGGLLWIAAMVLVRSHSH*
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