NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066845_10007682

Scaffold Ga0066845_10007682


Overview

Basic Information
Taxon OID3300005432 Open in IMG/M
Scaffold IDGa0066845_10007682 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3638
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024796Metagenome / Metatranscriptome204Y
F030771Metagenome / Metatranscriptome184Y
F071290Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0066845_1000768211F030771GGAGMQLLEVMNMDNLALLSREGEQGSDGAMIRKELKRREAIGYWKGGFAKYEIKDDEPVSTVGTVRIVR*
Ga0066845_100076824F024796GGAGMGQYSDLVEKQRTLLEVEKWRKGVKQIMMVATPDKKLWTTTYNDESQLFEKYQDDRWTSTTLGSRMTTQDCVDQMSREEQDAKSRR*
Ga0066845_100076829F071290AGGAGGMPAKWKESEVIHARDARGRMMRTDNPIKKYKHYYLKQTPSAELIEYLNGYSSKPKKIMKARNELVRRGYTITWKPKAVV*
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