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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005434 Open in IMG/M |
| Scaffold ID | Ga0070709_10000357 Open in IMG/M |
| Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28272 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (44.44%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan: Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.4774 | Long. (o) | -85.451 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013245 | Metagenome / Metatranscriptome | 273 | Y |
| F020066 | Metagenome / Metatranscriptome | 226 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070709_1000035710 | F020066 | N/A | MRVSILRACLCWAISAILPLTSLGQALPEKSGGAILHAQGGVWVNGYEAHDSSAVFAGDIVETKSGATANLSLEGSTVMIAPESVTKFQGDLIELDHGGVSVTTSRGFKVRVNCVLVVPVQNEWTEYSVTSVTPTLQVAAHKLDVNVEHDRGRSKEAAPATAPDQTTERASVREGEQKSYNETDLCGAARPASPASGISPKWYIAGAAGGGLLILLLIHGGGSKPQVSPSAP* |
| Ga0070709_100003578 | F013245 | GGAGG | MSGKRLCVAMVVVATLLAVSALAQDEKNEVGGILGRTFIADQGIQNATYFDPIIHTGKGLTIEGEYARRFLVTPIYAISAEGLLLYNWDVDLNAGEYGHSVVPSDLKKLFVTPAARVNLFPTTAVSPWISFGAGFGRITQNDQLIYGGTNPGKSTTSAVIEAGFGLDVKVWRKLSIRMDVRDFWAGQPDFPLAPTGNTRQHNIFVGGGAFWRF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |